I still need to figure out where to move it so that it is down on the bottom. I followed the instructions on the MT site exactly the way they were written, so the trackback is up at the top. I'll worry about it later.
Well, I figured out what I had done wrong with Trackback; I had the code installed after the horozontal rule that I use to separate my posts. It was an easy fix, and now the template makes much more sense. Imagine that...